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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015813263.1_cds_XP_016497484.1_11605
CDS Infomation

[gene=LOC107816298] [db_xref=GeneID:107816298] [protein=probable polygalacturonase] [protein_id=XP_016497484.1] [location=complement(join(9178..9218,10166..10786,11324..11394,11704..11878,12029..12149,12965..13300))] [gbkey=CDS]
Sequence

ATGAATCAATGGGTTGGATCACTTTTCCTATGCATTTTGGGCATGTTGCTTCTGATGAAC
GGGTCAGTAGTGGCGGAGGTGGAGACATGCTCGGGGATAGTGCCAATGCAGTATAGGTAT
GATAAGATATCATTATTGGACTATGGAGGTGTAGGTGACGGACGGACGTTGAATACGAAA
GCGTTTATGGAAGCAATTTTTCGAATTCAGCACTTGAAGAGGAGGGGTGGAACGTTGCTT
TACGTACCTGCTGGTGTATATTTGACTGGTCCATTTAATCTTACTAGTCGAATGACTCTT
TATCTGGCCCGTGGTGCTGTTATCAAAGCCACTCAAGATGCCAGTCAATGGCCATTAGTT
GATCCATTGCCTTCATATGGGAGAGGAAGAGAGCGACCTGGTGGAAGGTATATGAGTTTA
CTCCATGGAGACGGGCTCCATGATGTGATTATCACTGGTGAGAATGGTACTATTGATGGC
CAGGGTGATGTTTGGTGGAATATGTGGAGGCAAAGAACTCTTCAATTCACAAGACCTCAT
CTCATTGAACTAATGAATTCCAGAGGCATAATCATTTCTAATGTCATTTTCAAGAACTCC
CCCTTTTGGAATATCCATCCTGTTTATTGCAGCAATGTTGTTATTCGATATGTCACCATA
TTGGCTCCAGCTGATTCTCCAAACACCGATGGAATTGATCCAGATTCAAGCTCCCATGTC
TGCATAGAGGACTCTTACATTTCCGTAGGGGATGACCTAGTAGCTGTGAAGAGTGGGTGG
GATCAATATGGCATTGCTTATGGTCGCCCTAGTCATGGCATAACCATCCGAAGGATCACT
GGATCATCTCCATTTGCTGGAATTGCTGTTGGAAGTGAAACTTCCGGTGGCGTAGCGGAT
GTTTTAGCTGAGCATATAAACCTTTTCGACATGGGAGTTGGCATTCACATTAAGACAAAC
ATTGGTCGAGGAGGGGTGATCAGAAACATCACGGTCTCAAACGTCTACATGGAAAATACA
CGAACAGGGATTAAGATTGCAGGTGATGTTGGAGACCATCCAGATGAAAAATTCAATCCG
AATGCTCTTCCAGTGGTTAAGGGTATCAAGATTAAGGATGTTTGGGGTGAAAAGGTTTTA
CAGGCTGGTTTGATCCGTGGTTTGAAGAATTCCCCTTTCTCTGGAATTTGTCTCTCCAAT
ATCAACCTTCATGGCAACAACCCCGGACCACGAAATTCCCCTTGGAAATGCTCAGATGTT
AGCGGAGCTGCAATTCAAGTCAGCCCTTGGCCTTGCTCAGAACTCACCAGCAGCCAACAA
ACTGGTTATGTGCATGGTGGAAATGGTGGTGGCATAGTCTGTTAG

Peptide Sequence

PEP ID

XP_016497484.1
PEP Infomation

PREDICTED: probable polygalacturonase [Nicotiana tabacum]
Sequence

MNQWVGSLFLCILGMLLLMNGSVVAEVETCSGIVPMQYRYDKISLLDYGGVGDGRTLNTK
AFMEAIFRIQHLKRRGGTLLYVPAGVYLTGPFNLTSRMTLYLARGAVIKATQDASQWPLV
DPLPSYGRGRERPGGRYMSLLHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPH
LIELMNSRGIIISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSHV
CIEDSYISVGDDLVAVKSGWDQYGIAYGRPSHGITIRRITGSSPFAGIAVGSETSGGVAD
VLAEHINLFDMGVGIHIKTNIGRGGVIRNITVSNVYMENTRTGIKIAGDVGDHPDEKFNP
NALPVVKGIKIKDVWGEKVLQAGLIRGLKNSPFSGICLSNINLHGNNPGPRNSPWKCSDV
SGAAIQVSPWPCSELTSSQQTGYVHGGNGGGIVC

Transcript Sequence

Gene sequence data has not been registered.